论文著作 Publications

Fu, Y., Qu, Z., Wang, Y., Sun, P., Jiao, N., Xu*, D. 2024. Biogeographical and biodiversity patterns of planktonic microeukaryotes along the tropical western to eastern Pacific Ocean transect revealed by metabarcoding. Microbiology Spectrum

Hu, C., Yu, L., Chen, X., Liu, J., Zhang, Y., Batt, J., Xiao, X., Shi, Q., Zhang, R., Luo, T., Jiao*, N., Xu*, D. 2024. Adaptive strategies of high and low nucleic acid prokaryotes in response to declining resource availability and selective grazing by protozoa. Science China Earth Sciences, 67, https://doi.org/10.1007/s11430-023-1326-2

Sun*, P., Wang, Y., Huang, X., Xu, S., Logares, R., Huang, Y., Xu, D., Huang, B. 2024. Cracking the dynamic code of the deep: Unexpected seasonal patterns of active protistan-bacterial microbiomes in the mesopelagic zone of the South China Sea. Progress in Oceanography, 225, 103280.

Zhang, H., Li, R., Gu, B., Kong, H., Xu, J., Zhang, R., Li, X., Jiao, N., Xu*, D. 2024. Dynamics of haptophytes (Eukaryota, Hacrobia) revealed via short-term sampling in the South China Sea. Journal of Ocean University of China, 23: 1677-1688.

Kong, H., Yang, E., Jiao, N., Lee, Y., Jung, J., Cho, K., Moon, J., Kim, J., Xu*, D. 2023. RNA outperforms DNA-based metabarcoding in assessing the diversity and response of microeukaryotes to environmental variables in the Arctic Ocean. Sci. Total. Environ.

Sun*, P., Wang, Y., Zhang, Y., Logares, R., Cheng, P., Xu, D., Huang, B. 2023. From the sunlit to the aphotic zone: Assembly mechanisms and co-occurrence patterns of protistan-bacterial microbiotas in the western Pacific Ocean. mSystems

Gu, B., Huang, H., Zhang, Y., Li, R., Wang, L., Wang, Y., Sun, J., Wang, J., Zhang, R., Jiao, N., Xu*, D. 2022. High dynamics of ciliate community revealed via short-term, high-frequency sampling in a subtropical estuarine ecosystem. Front. Microbiol. 13:797638. doi: 10.3389/fmicb.2022.797638

Sun, P., Liao, Y., Wang, Y., Yang, E.-J., Jiao, N., Lee, Y., Jung, J., Cho, K.-H., Moon, J.-K., Xu*, D. 2022. Contrasting community composition and co-occurrence relationships of the active pico-sized haptophytes in the surface and subsurface chlorophyll maximum layers of the Arctic Ocean in Summer. Microorganisms 2022, 10, 248. https://doi.org/10.3390/microorganisms10020248

Xu*, D., Kong, H., Yang, E.J., Wang, Y., Li, X., Sun*, P., Jiao, N., Lee, Y., Jung, J., Cho, K. 2022. Spatial dynamics of active microeukaryotes along a latitudinal gradient: diversity, assembly process, and co-occurrence relationships. Environ. Res. 212: 113234.

Gu, B., Wang, Y., Xu, J., Jiao*, N., Xu*, D. 2021. Water mass shapes the distribution patterns of planktonic ciliates (Alveolata, Ciliophora) in the subtropical Pearl River Estuary. Marine Pollution Bulletin, 167, 112341.

Li, R., Hu, C., Wang, J., Sun, J., Wang, Y., Jiao*, N., Xu*, D. 2021. Biogeographical Distribution and Community Assembly of Active Protistan Assemblages along an Estuary to a Basin Transect of the Northern South China Sea. Microorganisms, 9: 351.

Song#, W., Xu#, D., Chen, X., Warren, A., Shin, M.K., Song, W., Li, L. 2021 Overview of the diversity, phylogeny and biogeography of strombidiid oligotrich ciliates (Protista, Ciliophora), with a brief revision and a key to the known genera. Front. Microbiol. 12:700940. doi: 10.3389/fmicb.2021.700940

Wang, R., Bai, Y., Hu, T., Xu, D., Suzuki, T., Hu, X. 2021. Integrative taxonomy and molecular phylogeny of three poorly known tintinnine ciliates, with the establishment of a new genus (Protista; Ciliophora; Oligotrichea). BMC Ecol Evo, 21:115.

Xu*, D., Yang, Y., Zhang*, R. 2021. Measurement of Virus-Induced Phytoplankton Mortality. In: Gao et al., Research Methods of Environmental Physiology in Aquatic Sciences. Springer, Science Press, Beijing

Yang*, J., Chen, Z., Chen, D., Xu, D. 2021. Spatial distribution of the microzooplankton communities in the northern South China Sea: Insights into their function in microbial food webs. Marine Pollution Bulletin, 162: 111898.

蔡阮鸿，郑强，陈晓炜，徐大鹏，王煜，骆庭伟，张锐* 2021. 微型生物碳泵过程机制研究进展. 厦门大学学报. 60:355–366.

陈一璇，孔菏君，徐大鹏* 2021. 基于高通量测序技术的北冰洋典型环境原生生物多样性研究进展. 海洋科学. 45, 81-88.

Gu, R., Sun, P., Wang, Y., Yu, F., Jiao, N., Xu*, D. 2020. Genetic Diversity, Community Assembly, and Shaping Factors of Benthic Microbial Eukaryotes in Dongshan Bay, Southeast China. Frontiers in Microbiology, 11:592489. doi: 10.3389/fmicb.2020.592489

Hu, C., Chen, X., Yu, L., Xu*, D., Jiao*, N. 2020. Elevated Contribution of Low Nucleic Acid Prokaryotes and Viral Lysis to the Prokaryotic Community Along the Nutrient Gradient From an Estuary to Open Ocean Transect. Frontiers in Microbiology, 11:612053. doi: 10.3389/fmicb.2020.612053

Huang#, H., Yang#, J., Huang, S., Gu, B., Wang, Y., Wang, L., Jiao, N., Xu,* D. 2021. Spatial distribution of planktonic ciliates in the western Pacific Ocean: along the transect from Shenzhen (China) to Pohnpei (Micronesia). Marine Life Science & Technology, doi:10.1007/s42995-020-00075-7.

Kim, S., Xu, D., Jung, J., Choi*, J. 2020. Phylogeny and genetic/morphological variation of Strombidinopsis minima-like species (Ciliophora: Choreotrichia). Journal of Eukaryotic Microbiology, 67: 115–124.

Li, X., Warren, A., Jiao, N., Xu*, D. 2020. Distribution of protists in the deep South China Sea revealed by high-throughput sequencing. Journal of Ocean University of China, 19: 161-170.

Xu* D, Kong H, Yang E-J, Li X, Jiao N, Warren A, Wang Y, Lee Y, Jung J and Kang S-H 2020. Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing. Frontiers in Microbiology, 11:1170. doi: 10.3389/fmicb.2020.01170

Yang, J., Huang, S., Fan, W., Warren, A., Jiao, N., Xu*, D. 2020. Spatial distribution patterns of planktonic ciliate communities in the East China Sea: Potential indicators of water masses. Marine Pollution Bulletin, 156:111253.

Zheng*, Q., Lin, W., Wang, Y., Xu, D., Liu, Y., Jiao, N. 2020. Top-down controls on nutrient cycling and population dynamics in a model estuarine photoautotroph–heterotroph co-culture system. Molecular Ecology, doing: 10.1111/mec.15750

Li, X., Xu*, J., Shi, Z., Xu, D., Li, R., Li, Q., Liu, H. 2019. Regulation of protist grazing on bacterioplankton by hydrological conditions in coastal waters. Estuarine, Coastal & Shelf Science, 218: 1-8.

Song#, W., Xu#, D., Zhang#, Q., Liu, W., Warren, A., Song*, W. 2019. Taxonomy and phylogeny of two poorly studied genera of marine oligotrich ciliates including descriptions of two new species: Cyrtostrombidium paraboreale sp. n. and Apostrombidium orientale sp. n. (Ciliophora: Spirotrichea). European Journal of Protistology, 70: 1–16.

Sun*, P., Huang, L., Xu, D., Warren, A., Huang, B., Wang, Y., Wang, L., Xiao, W., Kong, J. 2019. Integrated space-time dataset reveals high diversity and distinct community structure of ciliates in mesopelagic waters of the Northern South China Sea. Frontiers in Microbiology, 10: 2178. doi: 10.3389/fmicb.2019.02178

Li, R., Jiao, N., Warren, A., Xu*, D. 2018. Changes in community structure of active protistan assemblages from the lower Pearl River to coastal South China Sea. European Journal of Protistology, 63: 72–82.

Xu*, D., Sun, P., Zhang, Y., Li, R., Huang, B., Jiao, N., & Warren, A. 2018. Pigmented microbial eukaryotes fuel the deep sea carbon pool in the tropical Western Pacific Ocean. Environmental Microbiology, 20: 3811–3824.

Xu*, D., Jiao, N., Ren, R., Warren, A. 2017. Distribution and diversity of microbial eukaryotes in bathypelagic waters of the South China Sea. Journal of Eukaryotic Microbiology, 64, 370–382. doi:10.1111/jeu.12372