论文著作 Publications

Wen Z., Browning T.J., Dai R., Wu W., Li W., Hu X., Lin W., Wang L., Liu X., Cao Z., Hong H.*, Shi D.* 2022. The response of diazotrophs to nutrient amendment in the South China Sea and western North Pacific. Biogeosciences 19: 5237-5250

Zhang F.#, Wen Z.#, Wang S., Tang W., Luo Y.-W., Kranz S.A., Hong H.*, Shi D.* 2022. Phosphate limitation intensifies negative effects of ocean acidification on globally important nitrogen fixing cyanobacterium. Nature Communications 13: 6730

Kolody B., Smith S., Allen L.Z., McCrow J., Moustafa A., Shi D., Hopkinson B., Morel F.M.M., Ward B.B., Allen A. 2022. Nitrogen and iron availability drive metabolic remodeling and natural selection of diverse phytoplankton during experimental upwelling. mSystems 7: 10.1128/msystems.00729-22

Wen Z.#, Browning T.J.#, Cai Y., Dai R., Zhang R., Du C., Jiang R., Lin W., Liu X., Cao Z., Hong H., Dai M., Shi D.* 2022. Nutrient regulation of biological nitrogen fixation across the tropical western North Pacific. Science Advances 8: eabl7564

Wang S., Koedooder C., Zhang F., Kessler N., Eichner M., Shi D., Shaked Y. 2022. Colonies of the marine cyanobacterium Trichodesmium optimize dust utilization by selective collection and retention of nutrient-rich particles. iScience 25: 103587

Ye Y., Sunda W.G., Hong H., Shi D.* 2022. Effect of increased CO2 on iron-light-CO2 co-limitation of growth in a marine diatom. Limnology and Oceanography 67: 172-186

Browning T.J., Liu X., Zhang R., Wen Z., Liu J., Zhou Y., Xu F., Cai Y., Zhou K., Cao Z., Zhu Y., Shi D., Achterberg E.P., Dai M. 2021. Nutrient co-limitation in the subtropical Northwest Pacific. Limnology and Oceanography Letters doi.org/10.1002/lol2.10205

Hong H.*#, Zhao Y.#, Huang L., Zhong D., Shi D.* 2021. Bone developmental toxicity of organophosphorus flame retardants TDCIPP and TPhP in marine medaka Oryzias melastigma. Ecotoxicology and Environmental Safety 223: 112605

Hong H., Wang J., Shi D. 2021. Effects of salinity on the chronic toxicity of 4-methylbenzylidene camphor (4-MBC) in the marine copepod Tigriopus japonicus. Aquatic Toxicology 232: 105742

Pan H., Liu D., Shi D., Yang S., Pan W. 2021. Analysis of the spatial and temporal distributions of ecological variables and the nutrient budget in the Beibu Gulf. Acta Oceanologica Sinica 40: 14-31

Pan H., Yu X., Liu D., Shi D., Yang S., Pan W. 2021. Marine environmental regionalization for the Beibu Gulf based on a physical-biological model. Journal of Marine Science and Engineering 9: 187

Li W., Sunda W.G., Lin W., Hong H., Shi D.* 2020. The effect of cell size on cellular Zn and Cd and Zn-Cd-CO2 co-limitation of growth rate in marine diatoms. Limnology and Oceanography 65: 2896-2911

Zheng Z.-Z., Zheng L.-W., Xu M., Tan E., Hutchins D.A., Deng W., Zhang Y., Shi D., Dai M., Kao S.-J. 2020. Substrate regulation leads to differential responses of microbial ammonia-oxidizing communities to ocean warming. Nature Communications 11: 3511

Luo Y.-W.*#, Shi D.*#, Kranz S.A., Hopkinson B.M., Hong H., Shen R., Zhang F. 2019. Reduced nitrogenase efficiency dominates response of the globally important nitrogen fixer Trichodesmium to ocean acidification. Nature Communications 10: 1521

Lu Y.#, Wen Z.#, Shi D., Lin W., Bonnet S., Dai M., Kao S.-J. 2019. Biogeography of N2 fixation influenced by the western boundary current intrusion in the South China Sea. Journal of Geophysical Research: Oceans 124: 10.1029/2018JC014781

Zhang F., Hong H., Kranz S.A., Shen R., Lin W., Shi D.* 2019. Proteomic responses to ocean acidification of the marine diazotroph Trichodesmium under iron-replete and iron-limited conditions. Photosynthesis Research 142:17–34

Shi D.*, Hong H., Su X., Liao L., Chang S., Lin W. 2019. The physiological response of marine diatoms to ocean acidification: differential roles of seawater pCO2 and pH. Journal of Phycology 55: 521-533

Xu M., Li X., Shi D., Zhang Y., Dai M., Huang T., Glibert P.M., Kao S.-J. 2019. Coupled effect of substrate and light on assimilation and oxidation of regenerated nitrogen in the euphotic ocean: Coupled effect of substrate and light. Limnology and Oceanography 64: 1270-1283

Chen L., Li X., Hong H., Shi D. 2018. Multigenerational effects of 4-methylbenzylidene camphor (4-MBC) on the survival, development and reproduction of the marine copepod Tigriopus japonicus. Aquatic Toxicology 194: 94-102

Lu Y., Wen Z., Shi D., Chen M., Zhang Y., Bonnet S., Li Y., Tian J., Kao S.-J. 2018. Effect of light on N2 fixation and net nitrogen release of Trichodesmium in a field study. Biogeosciences 15: 1-12

Wan X., Sheng H.-X., Dai M., Zhang Y., Shi D., Trull T., Zhu Y., Lomas M., Kao S.-J. 2018. Ambient nitrate switches the ammonium consumption pathway in the euphotic ocean. Nature Communications 9: 915.

Wen Z., Lin W., Shen R., Hong H., Kao S.-J., Shi D.* 2017. Nitrogen fixation in two coastal upwelling regions of the Taiwan Strait. Scientific Reports 7: 17601, doi:10.1038/s41598-017-18006-5

Shi D.*, Shen R., Kranz S.A., Morel F.M.M., Hong H. 2017. Response to Comment on The complex effects of ocean acidification on the prominent N2-fixing cyanobacterium Trichodesmium. Science 357: eaao0428

Hong H., Li W., Li X., Huang B., Shi D.* 2017. Determination of glycolic acid in natural seawater by liquid chromatography coupled with triple quadrupole mass spectrometry. Limnology and Oceanography: Methods 15: 631-641

Hong H., Shen R., Zhang F., Wen Z., Chang S., Lin W., Kranz S.A., Luo Y.-W., Kao S.-J., Morel F.M.M., Shi D.* 2017. The complex effects of ocean acidification on the prominent N2-fixing cyanobacterium Trichodesmium. Science 356: 527-531 (full text)

Hong H., Li D., Lin W., Li W., Shi D.* 2017. Nitrogen nutritional condition affects the response of energy metabolism in diatoms to elevated carbon dioxide. Marine Ecology Progress Series 567: 41-56

Hong H., Lv D., Liu W., Huang L., Chen L., Shen R., Shi D. 2017. Toxicity and bioaccumulation of three hexabromocyclododecane diastereoisomers in the marine copepod Tigriopus japonicas. Aquatic Toxicology 188: 1-9

Shi D., Lv D., Liu W., Shen R., Li D., Hong H. 2017. Accumulation and developmental toxicity of hexabromocyclododecanes (HBCDs) on the marine copepod Tigriopus japonicus. Chemosphere 167: 155-162

Shi D.*, Li W., Hopkinson B., Hong H., Li D., Kao S.-J., Lin W. 2015. Interactive effects of light, nitrogen source and carbon dioxide on energy metabolism in the diatom Thalassiosira pseudonana. Limnology and Oceanography 60: 1805-1822

Hong H., Li D., Shen R., Wang X., Shi D.* 2014. Mechanisms of hexabromocyclododecanes induced developmental toxicity in marine medaka (Oryzias melastigma) embryos. Aquatic Toxicology 152: 173-185

Shi D.*, Kranz S.A., Kim J.-M., Morel F.M.M.* 2012. Ocean acidification slows nitrogen fixation and growth in the dominant diazotroph Trichodesmium under low-iron conditions. Proceedings of the National Academy of Sciences of the United States of America 109(45): 18255-18256; E3094-3100

Lomas M.W., Hopkinson B.M.#, Losh J.L#, Ryan D.E.#, Shi D.#, Xu Y.#, Morel F.M.M. 2012. Effect of ocean acidification on cyanobacteria in the subtropical North Atlantic. Aquatic Microbial Ecology 66: 211-222

Xu Y., Shi D., Aristilde L., Morel F.M.M. 2012. The effect of pH on the uptake of zinc and cadmium in marine phytoplankton: Possible role of weak complexes. Limnology and Oceanography 57(1): 293-304

Shi D.*, Xu Y., Hopkinson B.M., Morel F.M.M. 2010. Effect of ocean acidification on iron availability to marine phytoplankton. Science 327: 676-679

Hopkinson B.M., Xu Y., Shi D., McGinn P.J., Morel F.M.M. 2010. The effect of CO2 on the photosynthetic physiology of phytoplankton in the Gulf of Alaska. Limnology and Oceanography 55(5): 2011-2024

Shi D.*, Xu Y., Morel F.M.M. 2009. Effects of the pH/pCO2 control method on medium chemistry and phytoplankton growth. Biogeosciences 6: 1199-1207

Shi D., Wang W.-X. 2005. Uptake of aqueous and dietary metals by mussel Perna viridis with different Cd exposure histories. Environmental Science & Technology 39: 9363-9369

Shi D., Wang W.-X. 2004. Understanding the differences in Cd and Zn bioaccumulation and subcellular storage among different populations of marine clams. Environmental Science & Technology 38: 449-456

Shi D., Wang W.-X. 2004. Modification of trace metal accumulation in the green mussel Perna viridis by exposure to Ag, Cu, and Zn. Environmental Pollution 132: 265-277

Shi D., Blackmore G., Wang W.-X. 2003. Effects of aqueous and dietary preexposure and resulting body burden on silver biokinetics in the green mussel Perna viridis. Environmental Science & Technology 37: 936-943